| BAG5 |
13 |
True |
AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21 |
|
| CNTN4 |
34 |
True |
CNTN4 |
|
| NTM |
16 |
True |
SNX19 (only gene in locus), NTM is somewhat nearby |
|
| CSMD1 |
79 |
False |
CSMD1 |
|
| ARL6IP4 |
9 |
True |
ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8 |
|
| NXPH4 |
20 |
False |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|
| EPC2 |
86 |
True |
EPC2; KIF5C and MBD5 are nearby |
|
| CSMD3 |
33 |
False |
No gene in locus itself, KCNV1, CSMD3, and SYBU are far away on each side of the gene desert. |
|
| SEPT3 |
57 |
False |
CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL |
|
| OGFOD2 |
9 |
False |
ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8 |
|
| C12orf65 |
9 |
False |
ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8 |
|
| CYP17A1 |
3 |
True |
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L |
|
| DGKI |
62 |
False |
DGKI PTN; CHRM2 is nearby. |
|
| NEGR1 |
21 |
False |
No genes in locus, LRRIQ3 FPGT NEGR1 are nearby. |
|
| GTDC1 |
58 |
False |
No genes within locus (gene desert). Both ZEB2 and GTDC1 are nearby. |
|
| PAK6 |
65 |
True |
ANKRD63 PAK6 PLCB2 |
|
| R3HDM2 |
20 |
False |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|
| SLC38A7 |
89 |
True |
CNOT1 SLC38A7 NDRG4 |
|
| ADAMTSL3 |
29 |
False |
ADAMTSL3 GOLGA6L4 ZSCAN2; NMB is nearby locus |
|
| TCF20 |
57 |
True |
CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL |
|
| NAB2 |
20 |
False |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|
| NCAN |
47 |
False |
CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6 |
|
| PITPNM2 |
9 |
True |
ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8 |
|
| OTUD7B |
48 |
True |
ANP32E APH1A C1orf51 C1orf54 CA14 OTUD7B PLEKHO1 VPS45 |
|
| LRP1 |
20 |
True |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|
| SLC32A1 |
27 |
False |
ACTR5 PPP1R16B SLC32A1 FAM83D DHX35 |
|
| AMBRA1 |
25 |
True |
AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408 |
|
| AKT3 |
64 |
True |
AKT3 SDCCAG8 |
|
| DOC2A |
38 |
False |
ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3 |
|
| GRM3 |
44 |
False |
GRM3 |
|
| SNAP91 |
49 |
True |
SNAP91 |
|
| HAPLN4 |
47 |
True |
CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6 |
|
| HCN1 |
72 |
False |
HCN1 |
|
| C10ORF32 |
3 |
True |
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L |
|
| FXR1 |
26 |
True |
DNAJC19 FXR1; SOX2 is nearby |
|
| LRRN3 |
15 |
False |
IMMP2L (directly in locus), LRRN3, DOCK4 |
|
| IMMP2L |
15 |
True |
IMMP2L (directly in locus), LRRN3, DOCK4 |
|
| SLC35G2 |
40 |
False |
MSL2 NCK1 PCCB PPP2R3A SLC35G2 STAG1; EPHB1 is nearby |
|
| PTN |
62 |
False |
DGKI PTN; CHRM2 is nearby. |
|
| SHMT2 |
20 |
True |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|
| LUZP2 |
60 |
False |
No genes in locus, LUZP2 is nearby and only gene in area. |
|
| MIR137 |
2 |
False |
MIR137, DPYD |
|
| SYNGAP1 |
1 |
False |
Just the SYNGAP1 portion of the MHC locus |
|
| MAD1L1 |
7 |
True |
MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus. |
|
| CNNM2 |
3 |
True |
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L |
|
| SHISA9 |
51 |
False |
ERCC4, SHISA9, and MKL2 are nearby locus (no genes within locus). |
|
| GIGYF2 |
22 |
True |
C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF |
|
| MAN2A1 |
94 |
True |
MAN2A1; FER is nearby. |
|
| BRINP2_FAM5B |
101 |
False |
FAM5B; ASTN1 is nearby. |
|
| FES |
11 |
False |
FES FURIN MAN2A2 |
|
| FPGT |
21 |
False |
No genes in locus, LRRIQ3 FPGT NEGR1 are nearby. |
|
| PLCL1 |
31 |
True |
ANKRD44 BOLL COQ10B HSPD1 HSPE1 MARS2 PLCL1 RFTN2 SF3B1 |
|
| GALNT10 |
96 |
True |
GALNT10; GRIA1 is nearby. |
|
| GPM6A |
78 |
False |
GPM6A |
|
| MMP16 |
81 |
False |
MMP16 |
|
| TBC1D5 |
68 |
True |
TBC1D5; SATB1 is nearby and definitely possible |
|
| FUT9 |
56 |
False |
FUT9; MANEA is nearby |
|
| MAN2A2 |
11 |
True |
FES FURIN MAN2A2 |
|
| MBD5 |
86 |
True |
EPC2; KIF5C and MBD5 are nearby |
|
| NCK1 |
40 |
True |
MSL2 NCK1 PCCB PPP2R3A SLC35G2 STAG1; EPHB1 is nearby |
|
| C2ORF69 |
10 |
True |
TYW5, C2orf69, C2orf47 |
|
| GRAMD1B |
75 |
False |
GRAMD1B; HSPA8 and SCN3B are nearby |
|
| GRIA1 |
41 |
False |
GRIA1; GALNT10 is nearby, but GRIA1 is far more likely. |
|
| INA |
3 |
False |
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L |
|
| MDK |
25 |
False |
AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408 |
|
| SNX19 |
16 |
True |
SNX19 (only gene in locus), NTM is somewhat nearby |
|
| ZNF536 |
66 |
False |
ZNF536 |
|
| PTPRF |
46 |
True |
KDM4A PTPRF; ST3GAL3 and SZT2 are nearby |
|
| SLC39A8 |
6 |
False |
SLC39A8 (only gene in locus), and BANK1 ( not in zebrafish), MANBA, and NFKB1 nearby the locus |
|
| IREB2 |
14 |
True |
AC027228.1 AGPHD1 CHRNA3 CHRNA5 CHRNB4 IREB2 PSMA4 |
|
| GLT8D1 |
37 |
False |
GLT8D1 GNL3 ITIH1 ITIH3 ITIH4 MUSTN1 NEK4 NISCH NT5DC2 PBRM1 SMIM4 SPCS1 STAB1 TMEM110 TMEM110-MUSTN1 |
|
| CA8 |
73 |
False |
CA8 and RAB2A are nearby locus |
|
| PPP1R16B |
27 |
False |
ACTR5 PPP1R16B SLC32A1 FAM83D DHX35 |
|
| TMTC1 |
99 |
False |
TMTC1 |
|
| DGKZ |
25 |
True |
AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408 |
|
| KCNJ13 |
22 |
False |
C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF |
|
| ZSWIM6 |
8 |
False |
ZSWIM6 |
|
| LRRIQ3 |
21 |
False |
No genes in locus, LRRIQ3 FPGT NEGR1 are nearby. |
|
| CACNA1I |
39 |
True |
CACNA1I |
|
| KCTD13 |
38 |
False |
ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3 |
|
| CACNB2 |
19 |
False |
CACNB2 |
|
| CLCN3 |
55 |
True |
C4orf27 CLCN3 NEK1 |
|
| DPYD |
2 |
True |
MIR137, DPYD |
|
| NGEF |
22 |
True |
C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF |
|
| CKB |
13 |
True |
AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21 |
|
| KIF5C |
86 |
False |
EPC2; KIF5C and MBD5 are nearby |
|
| KLC1 |
13 |
True |
AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21 |
|
| FOXG1 |
83 |
False |
PRKD1; FOXG1 is nearby |
|
| SYBU |
38 |
False |
ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3 |
|
| CHRNA5 |
14 |
False |
AC027228.1 AGPHD1 CHRNA3 CHRNA5 CHRNB4 IREB2 PSMA4 |
|
| GRIN2A |
82 |
True |
GRIN2A |
|
| EGR1 |
69 |
False |
CDC25C CTNNA1 EGR1 ETF1 FAM53C GFRA3 HSPA9 KDM3B REEP2; LRRTM2 is nearby. |
|
| ANP32E |
48 |
True |
ANP32E APH1A C1orf51 C1orf54 CA14 OTUD7B PLEKHO1 VPS45 |
|
| ELFN1 |
7 |
False |
MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus. |
|
| EP300 |
32 |
True |
CHADL EP300 L3MBTL2 RANGAP1; MKL1 is nearby locus |
|
| SDCCAG8 |
64 |
True |
AKT3 SDCCAG8 |
|
| NRGN |
23 |
False |
ESAM MSANTD2 NRGN VSIG2; ROBO3 and ROBO4 are nearby |
|
| SATB2 |
76 |
False |
SATB2; The genes in locus #9 are "nearby". |
|
| TCF4 |
24 |
False |
TCF4 |
|
| TLE3 |
88 |
True |
No genes in locus. TLE3 most likely. |
|
| APOPT1 |
13 |
True |
AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21 |
|
| VRK2 |
28 |
True |
VRK2 |
|
| SEZ6L2 |
38 |
False |
ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3 |
|
| NFKB1 |
6 |
True |
SLC39A8 (only gene in locus), and BANK1 ( not in zebrafish), MANBA, and NFKB1 nearby the locus |
|
| ARHGAP1 |
25 |
True |
AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408 |
|
| TLE1 |
63 |
False |
TLE1 |
|
| ZNF804A |
17 |
True |
ZNF804A |
|
| PLCH2 |
50 |
True |
PLCH2 |
|
| CHRM4 |
25 |
False |
AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408 |
|
| ARL3 |
3 |
True |
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L |
|
| RORA |
45 |
False |
RORA, VPC13C |
|
| SBNO1 |
9 |
True |
ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8 |
|
| CACNA1C |
4 |
False |
CACNA1C |
|
| CNKSR2 |
18 |
False |
CNKSR2 |
|
| SIPA1L1 |
71 |
False |
AC005477.1, RGS6, Sipa1l1 is possible, although not in region, but this region is ranked too highly to make it worth checking |
|
| ASTN1 |
101 |
False |
FAM5B; ASTN1 is nearby. |
|
| RGS6 |
71 |
False |
AC005477.1, RGS6, Sipa1l1 is possible, although not in region, but this region is ranked too highly to make it worth checking |
|
| ATXN7 |
84 |
False |
ATXN7 C3orf49 PSMD6 THOC7; PRICKLE2 and SYNPR are also nearby |
|
| SRPK2 |
52 |
False |
SRPK2, PUS7 and MLL5 (KMT2E) within locus, ATXN7L1 and SYPL1 are nearby |
|
| FTCDNL1 |
10 |
True |
TYW5, C2orf69, C2orf47 |
|
| CHST12 |
7 |
True |
MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus. |
|
| KCNV1 |
33 |
False |
No gene in locus itself, KCNV1, CSMD3, and SYBU are far away on each side of the gene desert. |
|
| BCL11B |
70 |
False |
BCL11B (also known as Ctip2) |
|
| KMT2E_MLL5 |
52 |
True |
SRPK2, PUS7 and MLL5 (KMT2E) within locus, ATXN7L1 and SYPL1 are nearby |
|
| SATB1 |
68 |
True |
TBC1D5; SATB1 is nearby and definitely possible |
|
| TSNARE1 |
5 |
False |
TSNARE1, BAI1 (nearby locus) |
|
| C2ORF82 |
22 |
False |
C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF |
|
| C11ORF87 |
97 |
False |
C11orf87; RDX and ZC3H12C are nearby. |
|
| GATAD2A |
47 |
True |
CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6 |
|
| SREBF2 |
57 |
True |
CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL |
|
| SRR |
43 |
False |
SGSM2 SMG6 SRR TSR1 |
|
| STAT6 |
20 |
True |
LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
|
|