Gene Locus Rank Maternal Other Genes In Locus
BAG5 13 True AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21
CNTN4 34 True CNTN4
NTM 16 True SNX19 (only gene in locus), NTM is somewhat nearby
CSMD1 79 False CSMD1
ARL6IP4 9 True ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8
NXPH4 20 False LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
EPC2 86 True EPC2; KIF5C and MBD5 are nearby
CSMD3 33 False No gene in locus itself, KCNV1, CSMD3, and SYBU are far away on each side of the gene desert.
SEPT3 57 False CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL
OGFOD2 9 False ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8
C12orf65 9 False ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8
CYP17A1 3 True ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
DGKI 62 False DGKI PTN; CHRM2 is nearby.
NEGR1 21 False No genes in locus, LRRIQ3 FPGT NEGR1 are nearby.
GTDC1 58 False No genes within locus (gene desert). Both ZEB2 and GTDC1 are nearby.
PAK6 65 True ANKRD63 PAK6 PLCB2
R3HDM2 20 False LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
SLC38A7 89 True CNOT1 SLC38A7 NDRG4
ADAMTSL3 29 False ADAMTSL3 GOLGA6L4 ZSCAN2; NMB is nearby locus
TCF20 57 True CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL
NAB2 20 False LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
NCAN 47 False CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6
PITPNM2 9 True ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8
OTUD7B 48 True ANP32E APH1A C1orf51 C1orf54 CA14 OTUD7B PLEKHO1 VPS45
LRP1 20 True LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
SLC32A1 27 False ACTR5 PPP1R16B SLC32A1 FAM83D DHX35
AMBRA1 25 True AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408
AKT3 64 True AKT3 SDCCAG8
DOC2A 38 False ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3
GRM3 44 False GRM3
SNAP91 49 True SNAP91
HAPLN4 47 True CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6
HCN1 72 False HCN1
C10ORF32 3 True ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
FXR1 26 True DNAJC19 FXR1; SOX2 is nearby
LRRN3 15 False IMMP2L (directly in locus), LRRN3, DOCK4
IMMP2L 15 True IMMP2L (directly in locus), LRRN3, DOCK4
SLC35G2 40 False MSL2 NCK1 PCCB PPP2R3A SLC35G2 STAG1; EPHB1 is nearby
PTN 62 False DGKI PTN; CHRM2 is nearby.
SHMT2 20 True LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A
LUZP2 60 False No genes in locus, LUZP2 is nearby and only gene in area.
MIR137 2 False MIR137, DPYD
SYNGAP1 1 False Just the SYNGAP1 portion of the MHC locus
MAD1L1 7 True MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus.
CNNM2 3 True ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
SHISA9 51 False ERCC4, SHISA9, and MKL2 are nearby locus (no genes within locus).
GIGYF2 22 True C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF
MAN2A1 94 True MAN2A1; FER is nearby.
BRINP2_FAM5B 101 False FAM5B; ASTN1 is nearby.
FES 11 False FES FURIN MAN2A2
FPGT 21 False No genes in locus, LRRIQ3 FPGT NEGR1 are nearby.
PLCL1 31 True ANKRD44 BOLL COQ10B HSPD1 HSPE1 MARS2 PLCL1 RFTN2 SF3B1
GALNT10 96 True GALNT10; GRIA1 is nearby.
GPM6A 78 False GPM6A
MMP16 81 False MMP16
TBC1D5 68 True TBC1D5; SATB1 is nearby and definitely possible
FUT9 56 False FUT9; MANEA is nearby
MAN2A2 11 True FES FURIN MAN2A2
MBD5 86 True EPC2; KIF5C and MBD5 are nearby
NCK1 40 True MSL2 NCK1 PCCB PPP2R3A SLC35G2 STAG1; EPHB1 is nearby
C2ORF69 10 True TYW5, C2orf69, C2orf47
GRAMD1B 75 False GRAMD1B; HSPA8 and SCN3B are nearby
GRIA1 41 False GRIA1; GALNT10 is nearby, but GRIA1 is far more likely.
INA 3 False ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
MDK 25 False AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408
SNX19 16 True SNX19 (only gene in locus), NTM is somewhat nearby
ZNF536 66 False ZNF536
PTPRF 46 True KDM4A PTPRF; ST3GAL3 and SZT2 are nearby
SLC39A8 6 False SLC39A8 (only gene in locus), and BANK1 ( not in zebrafish), MANBA, and NFKB1 nearby the locus
IREB2 14 True AC027228.1 AGPHD1 CHRNA3 CHRNA5 CHRNB4 IREB2 PSMA4
GLT8D1 37 False GLT8D1 GNL3 ITIH1 ITIH3 ITIH4 MUSTN1 NEK4 NISCH NT5DC2 PBRM1 SMIM4 SPCS1 STAB1 TMEM110 TMEM110-MUSTN1
CA8 73 False CA8 and RAB2A are nearby locus
PPP1R16B 27 False ACTR5 PPP1R16B SLC32A1 FAM83D DHX35
TMTC1 99 False TMTC1
DGKZ 25 True AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408
KCNJ13 22 False C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF
ZSWIM6 8 False ZSWIM6
LRRIQ3 21 False No genes in locus, LRRIQ3 FPGT NEGR1 are nearby.
CACNA1I 39 True CACNA1I
KCTD13 38 False ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3
CACNB2 19 False CACNB2
CLCN3 55 True C4orf27 CLCN3 NEK1
DPYD 2 True MIR137, DPYD
NGEF 22 True C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF
CKB 13 True AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21
KIF5C 86 False EPC2; KIF5C and MBD5 are nearby
KLC1 13 True AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21
FOXG1 83 False PRKD1; FOXG1 is nearby
SYBU 38 False ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3
CHRNA5 14 False AC027228.1 AGPHD1 CHRNA3 CHRNA5 CHRNB4 IREB2 PSMA4
GRIN2A 82 True GRIN2A
EGR1 69 False CDC25C CTNNA1 EGR1 ETF1 FAM53C GFRA3 HSPA9 KDM3B REEP2; LRRTM2 is nearby.
ANP32E 48 True ANP32E APH1A C1orf51 C1orf54 CA14 OTUD7B PLEKHO1 VPS45
ELFN1 7 False MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus.
EP300 32 True CHADL EP300 L3MBTL2 RANGAP1; MKL1 is nearby locus
SDCCAG8 64 True AKT3 SDCCAG8
NRGN 23 False ESAM MSANTD2 NRGN VSIG2; ROBO3 and ROBO4 are nearby
SATB2 76 False SATB2; The genes in locus #9 are "nearby".
TCF4 24 False TCF4
TLE3 88 True No genes in locus. TLE3 most likely.
APOPT1 13 True AL049840.1 APOPT1 BAG5 CKB KLC1 PPP1R13B TRMT61A XRCC3 ZFYVE21
VRK2 28 True VRK2
SEZ6L2 38 False ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3
NFKB1 6 True SLC39A8 (only gene in locus), and BANK1 ( not in zebrafish), MANBA, and NFKB1 nearby the locus
ARHGAP1 25 True AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408
TLE1 63 False TLE1
ZNF804A 17 True ZNF804A
PLCH2 50 True PLCH2
CHRM4 25 False AMBRA1 ARHGAP1 ATG13 CHRM4 CKAP5 CREB3L1 DGKZ F2 HARBI1 MDK ZNF408
ARL3 3 True ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
RORA 45 False RORA, VPC13C
SBNO1 9 True ABCB9 ARL6IP4 C12orf65 CDK2AP1 MPHOSPH9, OGFOD2 PITPNM2 RILPL2 SBNO1 SETD8
CACNA1C 4 False CACNA1C
CNKSR2 18 False CNKSR2
SIPA1L1 71 False AC005477.1, RGS6, Sipa1l1 is possible, although not in region, but this region is ranked too highly to make it worth checking
ASTN1 101 False FAM5B; ASTN1 is nearby.
RGS6 71 False AC005477.1, RGS6, Sipa1l1 is possible, although not in region, but this region is ranked too highly to make it worth checking
ATXN7 84 False ATXN7 C3orf49 PSMD6 THOC7; PRICKLE2 and SYNPR are also nearby
SRPK2 52 False SRPK2, PUS7 and MLL5 (KMT2E) within locus, ATXN7L1 and SYPL1 are nearby
FTCDNL1 10 True TYW5, C2orf69, C2orf47
CHST12 7 True MAD1L1 (only gene in locus), and CHST12, SNX8, FTSJ2, EIF3B, NUDT1, and ELFN1 nearby locus.
KCNV1 33 False No gene in locus itself, KCNV1, CSMD3, and SYBU are far away on each side of the gene desert.
BCL11B 70 False BCL11B (also known as Ctip2)
KMT2E_MLL5 52 True SRPK2, PUS7 and MLL5 (KMT2E) within locus, ATXN7L1 and SYPL1 are nearby
SATB1 68 True TBC1D5; SATB1 is nearby and definitely possible
TSNARE1 5 False TSNARE1, BAI1 (nearby locus)
C2ORF82 22 False C2orf82 EFHD1 GIGYF2 KCNJ13 NGEF
C11ORF87 97 False C11orf87; RDX and ZC3H12C are nearby.
GATAD2A 47 True CILP2 GATAD2A HAPLN4 MAU2 NCAN NDUFA13 PBX4 SUGP1 TM6SF2 TSSK6
SREBF2 57 True CENPM CYP2D6 FAM109B NAGA NDUFA6 SEPT3 SHISA8 SMDT1 SREBF2 TCF20 TNFRSF13C WBP2NL
SRR 43 False SGSM2 SMG6 SRR TSR1
STAT6 20 True LRP1 MYO1A NAB2 NDUFA4L2 NXPH4 R3HDM2 SHMT2 STAC3 STAT6 TAC3 TMEM194A