Made
CSMD3
KCNV1
Locus Rank
33

Gene

Id
263
Gene Name
KCNV1
Duplicated
False
Maternal
False
Gene Not Within Locus (Nearby
True
Gene Description
Mouse Phenotype
Additional Image
Allen Brain
Allen Regions
Zfin In Situ
Zfin Brain Areas
Published Zebrafish Pehnotype
Not In Allen Brain
False
ZFIN Link
None
Allen Link
http://mouse.brain-map.org/gene/show/43341
More Additional Images
Papers

Locus Rank

Locus Rank
33
Genes in Region
No gene in locus itself, KCNV1, CSMD3, and SYBU are far away on each side of the gene desert.
Associated Snps
GWAS Region (hg19)
chr8:111460061-111630761
Genes Skipping
Ricopili Plot Surrounding Area
Distance On Each Side Of Locus In Above Plot
2 MB
Ricopili Plot
Gwas And Surrounding Region Pic
Gwas Region Pic
Genes In Locus Rank
CSMD3
KCNV1

Sequence 1

Ensembl Gene Name
KCNV1
Harvard Allele
a289
Mutation Area - WT DNA Sequence
TCGCTGTTGTCCTTGGACTCGAGTGTTTTCTTCAGCGAGCCTGCGCTTCCGACTGACGATCCACTGGAGTTCTTCATTATAAATGTGGGAGGAAGCCGCTACATCCTCTCTCAGGAACTGTTGGCCTCTCATCCAGAAACTCGTCTAGGAAAACTGGCCCTTTCCAGTCGAGACTCTGCTTTGGATCTGTGCGACGATGCCGATTTCCTGGAAAACGAGTACTTTTTTGACCGCAACTCACAGACCTTTCAGTACATTATGAACTTTTACAAAACAGGCCACTTGCATGTGAGAGAGGAGTTGTGTGTGATCTCGTTCCTTCAGGAAATCGAGTACTG
Mutation Area - Mutant DNA Sequence
TCGCTGTTGTCCTTGGACTCGAGTGTTTTCTTCAGCGAGCCTGCGCTTCCGACTGACGATCCACTGGAGTTCTTCATTATAAATGTGGGAGGAAGCCGCTACATCCTCTCTCAGGAACTGAGAGGAGTTGTGTGTGATCTCGTTCCTTCAGGAAATCGAGTACTG
Guide RNA Target Sites
GCTTCCGACTGACGATCCACTGG
AGGCCAACAGTTCCTGAGAGAGG
GTGCGACGATGCCGATTTCCTGG
AGGCCACTTGCATGTGAGAGAGG
Genotyping Primers
f, TCGCTGTTGTCCTTGGACTCGAG
r, CAGTACTCGATTTCCTGAAGGAACG
Alignment of WT and Mutant Sequences w/ gRNA Targets (cyan) and Genotyping Primers (pink) Shown on WT Sequence
Allele
173bpD
WT Genotyping Size
338
WT Protein Sequence
MCSSGSLRAHVTQSIMITDSSSPAEFYEDNASLLSLDSSVFFSEPALPTDDPLEFFIINV
GGSRYILSQELLASHPETRLGKLALSSRDSALDLCDDADFLENEYFFDRNSQTFQYIMNF
YKTGHLHVREELCVISFLQEIEYWGIDELRIDSCCRDKYYRRKEMKESLDIRKDADVMDK
EEEDFTGVLCQDLRQRLWDIMENPDSSKAAKTFGTLSMFFVVVSIVNMALISLDFSVIGA
PIILDILEYICIIWFTGELVLRFLCVRDKCKFSRSVVNIIDLLAILPFYVTLAVESLHGE
STELENVGRVVQVLRLMRSLRMLKLGRHSTGLKSLGLTIAQCYEEVGLLMLFLSVGISIF
ATLEYAIEHDTPETTFTNVPSAWWWATTSMTTVGYGDIRPDTAVGKVMAFICILSGILIL
ALPIAIINDRFSACYFTLKMKEAALRHGEVLKRLTRSSASDMSAIGVNLRDVYARSVLEM
LRLQGRERASTRSSAGDLWW-
Mutant Protein Sequence
MCSSGSLRAHVTQSIMITDSSSPAEFYEDNASLLSLDSSVFFSEPALPTDDPLEFFIINVG
GSRYILSQELRGVVCDLVPSGNRVLGHR-
Mutant Genotyping Size
165

Behavior Data

Behavior Data Summary
None
Behavior Data Description 1
Dark flash block 1 start Merged section Pvalue = not significant 45 het vs 35 hom ribgraph_mean_ribbon_fullboutdata_dpix_a0darkflash103.png
Behavior Data Graph 1
Behavior Data Description 2
Day all prepulse tap Merged section Pvalue = 0.0301 45 het vs 35 hom ribgraph_mean_ribbon_fullboutdata_dpix_dayprepulseinhibition100d.png
Behavior Data Graph 2
Behavior Data Description 3
Features of movement entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 45 het vs 35 hom ribgraph_mean_ribbonbout_aveboutdisp_10min_combo.png
Behavior Data Graph 3
Behavior Data Description 4
Frequency of movement entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 45 het vs 35 hom ribgraph_mean_ribbonbout_dpixnumberofbouts_10min_combo.png
Behavior Data Graph 4
Behavior Data Description 5
Location in well entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 45 het vs 35 hom ribgraph_mean_ribbonbout_averhofrac_10min_combo.png
Behavior Data Graph 5
Behavior Data Description 6
None
Behavior Data Graph 6
None
Behavior Data Description 7
None
Behavior Data Graph 7
None
Behavior Data Description 8
None
Behavior Data Graph 8
None
Behavior Data Description 9
None
Behavior Data Graph 9
None
Behavior Data Description 10
None
Behavior Data Graph 10
None
Behavior Data Description 11
None
Behavior Data Graph 11
None
Behavior Data Description 12
None
Behavior Data Graph 12
None
Behavior Data Description 13
None
Behavior Data Graph 13
None
Behavior Data Description 14
None
Behavior Data Graph 14
None