Locus Rank
38

Gene

Id
180
Gene Name
KCTD13
Duplicated
False
Maternal
False
Gene Not Within Locus (Nearby
False
Gene Description
Mouse Phenotype
Additional Image
Allen Brain
Allen Regions
Zfin In Situ
Zfin Brain Areas
brain, forebrain, forebrain anterior region, hindbrain, midbrain, retina, whole organism
Published Zebrafish Pehnotype
Not In Allen Brain
False
ZFIN Link
http://zfin.org/ZDB-GENE-060825-162
Allen Link
http://mouse.brain-map.org/gene/show/87744
More Additional Images
Papers

Locus Rank

Locus Rank
38
Genes in Region
ALDOA ASPHD1 C16orf92 DOC2A FAM57B GDPD3 HIRIP3 INO80E KCTD13 MAPK3 PPP4C SEZ6L2 TAOK2 TBX6 TMEM219 YPEL3
Associated Snps
rs12691307
GWAS Region (hg19)
chr16:29924377-30144877
Genes Skipping
ALDOA - definitely not; ASPHD1 - not in allen brain, and very unlikely; C16orf92 - nothing is known; FAM57B - hard to know, very little is known; GDPD3 - nothing in allen brain; HIRIP3 - histones; INO80E - maybe, but seems not that likely; MAPK3 - maybe; PPP4C - maybe, very unlikely; TAOK2 - maybe, but not in allen brain; TBX6 - not in allen brain, involved in development; TMEM219 - seems very unlikely, not in allen brain; YPEL3 - no.
Ricopili Plot Surrounding Area
Distance On Each Side Of Locus In Above Plot
0.2 MB
Ricopili Plot
Gwas And Surrounding Region Pic
Gwas Region Pic
Genes In Locus Rank
DOC2A
KCTD13
SYBU
SEZ6L2

Sequence 1

Ensembl Gene Name
kctd13
Harvard Allele
a290
Mutation Area - WT DNA Sequence
ctcagagatgcacatttaaacatgtgtccatttgtattgaagGCTGGGTGGTGTTGGACCGATGCGGGAGACACTTTTCCCTGGTGTTGAACTTCCTGCGGGACGGGACAGTTCCTTTGCCAGATAGCACGAGGGAGCTGGAGGAGGTGTTGAAGGAGGCGCAATACTACAGACTTCAGGGTCTTGTGCAGCACTGCCTCTCCACATTACAGgtcaggcgtgtacccttagacttactatgtttatactagtgatttcattatcttttgttgtttgattaataatggaaacacagacagc
Mutation Area - Mutant DNA Sequence
ctcagagatgcacatttaaacatgtgtccatttgtattgaagGCTGGGTGGTGTTGGACCGAATAAGGCTAGTCCGTTATCAACTAAAATAAGGCTAGCCTTATATTTTGCGGGAGACACTTTTCCCTGGTGTTGAACTTCCTGCGGAGGAGGAGGTGTTGAAGGAGGCGCAATACTACAGACTTCAGGGTCTTGTGCAGCACTGCCTCTCCACATTACAGgtcaggcgtgtacccttagacttactatgtttatactagtgatttcattatcttttgttgtttgattaataatggaaacacagacagc
Guide RNA Target Sites
GGGTGGTGTTGGACCGATGCGGG
GTGTTGAACTTCCTGCGGGACGG
AGATAGCACGAGGGAGCTGGAGG
GCCTCTCCACATTACAGgtcagg
Genotyping Primers
f, ctcagagatgcacatttaaacatgtgtcc
r, AGGAAGTTCAACACCAGGGAAAAGTG
Alignment of WT and Mutant Sequences w/ gRNA Targets (cyan) and Genotyping Primers (pink) Shown on WT Sequence
Allele
46bpI,37bpD
WT Genotyping Size
97
WT Protein Sequence
MSAEASGSSGGHAVTVSGSSPSSSSHVGEEKPGRSLVSSKYVKLNVGGTLHYTTVQTLSK
EDSLLRSICDGSTEVSIDSEGWVVLDRCGRHFSLVLNFLRDGTVPLPDSTRELEEVLKEA
QYYRLQGLVQHCLSTLQKRRDVCRGCHIPMITSAKEEQRMIATCRKPVVKLQNNRGNNKY
SYTSNSDDNLLKNIELFDKLGLRFNGRVLFIKDVLGDEICCWSFYGEGRKIAEVCCTSIV
YATEKKQTKVEFPEARIFEETLNILIYENGRGSGGMALLESGGVSSSGAGQSEEEGAGAG
GGDRRVRRIHVRRHIMHDERGHGQQTVYKD-
Mutant Protein Sequence
MSAEASGSSGGHAVTVSGSSPSSSSHVGEEKPGRSLVSSKYVKLNVGGTLHYTTVQTLSK
EDSLLRSICDGSTEVSIDSEGWVVLDRIRLVRYQLK-
Mutant Genotyping Size
143
Ribosome Profiling Development
Transcript Plot

Behavior Data

Behavior Data Summary
None
Behavior Data Description 1
Dark flash block 1 start Merged section Pvalue = not significant 15 het vs 14 hom ribgraph_mean_ribbon_fullboutdata_dpix_a0darkflash103.png
Behavior Data Graph 1
Behavior Data Description 2
Day all prepulse tap Merged section Pvalue = not significant 15 het vs 14 hom ribgraph_mean_ribbon_fullboutdata_dpix_dayprepulseinhibition100d.png
Behavior Data Graph 2
Behavior Data Description 3
Features of movement entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 15 het vs 14 hom ribgraph_mean_ribbonbout_aveboutdisp_10min_combo.png
Behavior Data Graph 3
Behavior Data Description 4
Frequency of movement entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 15 het vs 14 hom ribgraph_mean_ribbonbout_dpixnumberofbouts_10min_combo.png
Behavior Data Graph 4
Behavior Data Description 5
Location in well entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 15 het vs 14 hom ribgraph_mean_ribbonbout_averhofrac_10min_combo.png
Behavior Data Graph 5
Behavior Data Description 6
None
Behavior Data Graph 6
None
Behavior Data Description 7
None
Behavior Data Graph 7
None
Behavior Data Description 8
None
Behavior Data Graph 8
None
Behavior Data Description 9
None
Behavior Data Graph 9
None
Behavior Data Description 10
None
Behavior Data Graph 10
None
Behavior Data Description 11
None
Behavior Data Graph 11
None
Behavior Data Description 12
None
Behavior Data Graph 12
None
Behavior Data Description 13
None
Behavior Data Graph 13
None
Behavior Data Description 14
None
Behavior Data Graph 14
None